Publications

Below is a list of selected peer-reviewed publications from our lab. For a complete, up-to-date list visit our Google Scholar profile →

Selected Publications

Kazazian, K., Abdalmalak, A., Novi, S. L., Norton, L., Moulavi-Ardakani, R., Kolisnyk, M., Gofton, T. E., Mesquita, R. C., Owen, A. M. & Debicki, D. B.
Functional near-infrared spectroscopy: A novel tool for detecting consciousness after acute severe brain injury.
PNAS, 121(36), e2402723121. → DOI
Cao, J., Gorecki, J., Dale, R., Redwood-Sawyerr, C., Kontoravdi, C., Polizzi, K., Rowlands, C.J. & Dehghani, H.
Fluorescence diffuse optical monitoring of bioreactors: a hybrid deep learning and model-based approach for tomography.
Biomedical Optics Express, 15(9), 5009–5024. → DOI
Qin, Y., Wu, J., Bulger, E., Cao, J., Dehghani, H., Shinn-Cunningham, B. & Kainerstorfer, J.M.
Optimizing spatial accuracy in electroencephalography reconstruction through diffuse optical tomography priors in the auditory cortex.
Biomedical Optics Express, 15(8), 4859–4876. → DOI
Dale, R., Zheng, B., Orihuela-Espina, F., Ross, N., O’Sullivan, T.D., Howard, S. & Dehghani, H.
Deep learning-enabled high-speed, multi-parameter diffuse optical tomography.
Journal of Biomedical Optics, 29(7), 076004. → DOI

Hernandez, S.M. & Pollonini, L.
NIRSplot: A Tool for Quality Assessment of fNIRS Scans.
Biophotonics Congress: Biomedical Optics 2020, OSA Technical Digest, paper BM2C.5. → DOI

Orihuela-Espina, F., Leff, D.R., James, D.R., Darzi, A.W. & Yang, G.Z.
Imperial College near infrared spectroscopy neuroimaging analysis framework.
Neurophotonics, 5(1), pp.011011–011011. → DOI
Montero-Hernandez, S., Orihuela-Espina, F., Sucar, L.E., Pinti, P., Hamilton, A., Burgess, P. & Tachtsidis, I.
Estimating Functional Connectivity Symmetry between Oxy- and Deoxy-Haemoglobin: Implications for fNIRS Connectivity Analysis.
Algorithms, 11, 70. → DOI

Mesquita, R. C., Durduran, T., Yu, G., Buckley, E. M., Kim, M. N., Zhou, C., Choe, R., Sunar, U. & Yodh, A. G.
Direct measurement of tissue blood flow and metabolism with diffuse optics.
Philosophical Transactions. Series A, 369(1955), 4390–4406. → DOI

Mesquita, R. C., Franceschini, M. A. & Boas, D. A.
Resting state functional connectivity of the whole head with near-infrared spectroscopy.
Biomedical Optics Express, 1(1), 324–336. → DOI
Orihuela-Espina, F., Leff, D.R., James, D.R., Darzi, A.W. & Yang, G.Z.
Quality control and assurance in functional near infrared spectroscopy (fNIRS) experimentation.
Physics in Medicine & Biology, 55(13), p.3701. → DOI

Dehghani, H., Eames, M. E., Yalavarthy, P. K., Davis, S. C., Srinivasan, S., Carpenter, C. M., Pogue, B. W. & Paulsen, K. D.
Near infrared optical tomography using NIRFAST: Algorithm for numerical model and image reconstruction.
Communications in Numerical Methods in Engineering, 25(6), 711–732. → DOI
Dehghani, H., Srinivasan, S., Pogue, B. W. & Gibson, A.
Numerical modelling and image reconstruction in diffuse optical tomography.
Philosophical Transactions of the Royal Society A, 367, 3073–3093. → DOI